HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308862

Details for MGYG000308862, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccosoma faecigallinarum Bacteria > Firmicutes > Bacilli > RFN20 > CAG-631 > Caccosoma > Caccosoma faecigallinarum
Cluster representative

MGYG000319641

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319641 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308862’s cluster representative genome MGYG000319641 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319641 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308862 Copy API Endpoint
Samples containing this genome

MGYG000308862’s cluster representative (MGYG000319641) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319641’s sequence. Because MGYG000308862 has been clustered with MGYG000319641 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308862.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319641

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Containment Sample accession Animal accession Treatment
0.28 SAMEA10104987 Control
0.28 SAMEA7025273 Prebiotic
0.28 SAMEA9449937 Probiotic
0.28 SAMEA9449949 Prebiotic
0.28 SAMEA10159245 Prebiotic
0.28 SAMEA9449843 Probiotic
0.28 SAMEA10159244 Probiotic
0.27 SAMEA7697601 Prebiotic
0.27 SAMEA10104930 Control
0.27 SAMEA10104957 Control