MGYG000308760

Taxonomy

CAG-314 sp000437915 Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > CAG-314 > CAG-314 sp000437915

Cluster representative

MGYG000309575

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309575 on MGnify
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Annotations

MGYG000308760’s cluster representative genome MGYG000309575 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309575 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308760 Copy API Endpoint

MGYG000308760’s cluster representative (MGYG000309575) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309575’s sequence. Because MGYG000308760 has been clustered with MGYG000309575 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308760.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309575

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Containment	Sample accession	Animal accession	Treatment
0.26	SAMEA9449864	SAMEA112904860	Control
0.26	SAMEA10104921	SAMEA112905172	Prebiotic
0.25	SAMEA7571775	SAMEA112904797	Control
0.24	SAMEA9449858	SAMEA112904981	Probiotic
0.24	SAMEA10105024	SAMEA112905120	Control
0.22	SAMEA9449852	SAMEA112904941	Prebiotic