HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308749

Details for MGYG000308749, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides uniformis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides uniformis
Cluster representative

MGYG000308249

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308249 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308749’s cluster representative genome MGYG000308249 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308249 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308749 Copy API Endpoint
Samples containing this genome

MGYG000308749’s cluster representative (MGYG000308249) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308249’s sequence. Because MGYG000308749 has been clustered with MGYG000308249 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308749.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308249

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Containment Sample accession Animal accession Treatment
0.34 SAMEA7571797 Control
0.33 SAMEA7697612 Control
0.32 SAMEA10105072 Prebiotic
0.32 SAMEA10105029 Probiotic
0.31 SAMEA14099424 Prebiotic
0.30 SAMEA7571831 Control
0.28 SAMEA7025236 Probiotic
0.27 SAMEA9449955 Probiotic
0.27 SAMEA7697611 Prebiotic
0.27 SAMEA7025273 Prebiotic