HoloFood Data Portal

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MGYG000308745

Details for MGYG000308745, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthousia Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthousia
Cluster representative

MGYG000308745

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308745 on MGnify
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Annotations

MGYG000308745’s cluster representative genome MGYG000308745 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308745 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308745 Copy API Endpoint
Samples containing this genome

MGYG000308745’s cluster representative (MGYG000308745) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308745’s sequence. Because MGYG000308745 has been clustered with MGYG000308745 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308745.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308745

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Containment Sample accession Animal accession Treatment
0.72 SAMEA10104921 Prebiotic
0.71 SAMEA7571795 Prebiotic
0.70 SAMEA10104981 Probiotic
0.67 SAMEA9449905 Prebiotic
0.66 SAMEA10455496 Control
0.66 SAMEA9449907 Prebiotic
0.62 SAMEA10105060 Control
0.62 SAMEA9449878 Control
0.61 SAMEA9449875 Prebiotic
0.61 SAMEA7025245 Probiotic