MGYG000308707

Taxonomy

Gemmiger stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger stercorigallinarum

Cluster representative

MGYG000319054

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319054 on MGnify
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Annotations

MGYG000308707’s cluster representative genome MGYG000319054 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319054 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308707 Copy API Endpoint

MGYG000308707’s cluster representative (MGYG000319054) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319054’s sequence. Because MGYG000308707 has been clustered with MGYG000319054 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308707.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319054

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Containment	Sample accession	Animal accession	Treatment
0.20	SAMEA7571833	SAMEA112905047	Prebiotic
0.20	SAMEA7697624	SAMEA112905336	Probiotic
0.20	SAMEA10105011	SAMEA112904889	Prebiotic
0.20	SAMEA9449876	SAMEA112905249	Control