HoloFood Data Portal

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MGYG000308705

Details for MGYG000308705, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UMGS1781 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > UMGS1781
Cluster representative

MGYG000308705

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308705 on MGnify
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Annotations

MGYG000308705’s cluster representative genome MGYG000308705 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308705 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308705 Copy API Endpoint
Samples containing this genome

MGYG000308705’s cluster representative (MGYG000308705) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308705’s sequence. Because MGYG000308705 has been clustered with MGYG000308705 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308705.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308705

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Containment Sample accession Animal accession Treatment
0.72 SAMEA9449898 Prebiotic
0.70 SAMEA14099424 Prebiotic
0.70 SAMEA7697591 Probiotic
0.68 SAMEA10455477 Probiotic
0.68 SAMEA10104992 Prebiotic
0.65 SAMEA9449860 Control
0.63 SAMEA9449909 Prebiotic
0.62 SAMEA10159244 Probiotic
0.61 SAMEA9449937 Probiotic
0.61 SAMEA7571801 Probiotic