HoloFood Data Portal

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MGYG000308700

Details for MGYG000308700, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gemmiger avistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Gemmiger > Gemmiger avistercoris
Cluster representative

MGYG000319610

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319610 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308700’s cluster representative genome MGYG000319610 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319610 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308700 Copy API Endpoint
Samples containing this genome

MGYG000308700’s cluster representative (MGYG000319610) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319610’s sequence. Because MGYG000308700 has been clustered with MGYG000319610 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308700.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319610

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Containment Sample accession Animal accession Treatment
0.22 SAMEA9449949 Prebiotic
0.22 SAMEA10105011 Prebiotic
0.22 SAMEA7571829 Prebiotic
0.21 SAMEA10454438 Probiotic
0.21 SAMEA7571804 Prebiotic
0.21 SAMEA7571797 Control
0.21 SAMEA9449908 Prebiotic
0.21 SAMEA7571806 Control
0.21 SAMEA10104977 Control
0.21 SAMEA7697599 Control