HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308651

Details for MGYG000308651, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pseudoflavonifractor sp904419835 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Pseudoflavonifractor > Pseudoflavonifractor sp904419835
Cluster representative

MGYG000308237

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308237 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308651’s cluster representative genome MGYG000308237 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308237 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308651 Copy API Endpoint
Samples containing this genome

MGYG000308651’s cluster representative (MGYG000308237) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308237’s sequence. Because MGYG000308651 has been clustered with MGYG000308237 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308651.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308237

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7571839 Control
0.23 SAMEA7571773 Prebiotic
0.23 SAMEA9449937 Probiotic
0.23 SAMEA10104955 Control
0.23 SAMEA10159256 Probiotic
0.22 SAMEA7025265 Probiotic
0.22 SAMEA10105028 Probiotic
0.21 SAMEA10159246 Prebiotic
0.21 SAMEA10105071 Prebiotic
0.21 SAMEA9449909 Prebiotic