MGYG000308646

Taxonomy

UMGS1370 sp904395885 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > UMGS1370 > UMGS1370 sp904395885

Cluster representative

MGYG000310153

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310153 on MGnify
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Annotations

MGYG000308646’s cluster representative genome MGYG000310153 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310153 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308646 Copy API Endpoint

MGYG000308646’s cluster representative (MGYG000310153) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310153’s sequence. Because MGYG000308646 has been clustered with MGYG000310153 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308646.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310153

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025277	SAMEA112905229	Control
1.00	SAMEA7025264	SAMEA112904844	Probiotic
1.00	SAMEA7025258	SAMEA112905159	Probiotic
1.00	SAMEA9449854	SAMEA112905061	Prebiotic
1.00	SAMEA10104961	SAMEA112904891	Probiotic
1.00	SAMEA7025260	SAMEA112905317	Prebiotic
1.00	SAMEA7025238	SAMEA112905325	Probiotic
1.00	SAMEA10104977	SAMEA112905312	Control
0.99	SAMEA7571769	SAMEA112904793	Prebiotic
0.99	SAMEA10105023	SAMEA112904964	Control