MGYG000308631

Taxonomy

Phocaeicola plebeius_A Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Phocaeicola > Phocaeicola plebeius_A

Cluster representative

MGYG000316250

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316250 on MGnify
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Annotations

MGYG000308631’s cluster representative genome MGYG000316250 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316250 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308631 Copy API Endpoint

MGYG000308631’s cluster representative (MGYG000316250) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316250’s sequence. Because MGYG000308631 has been clustered with MGYG000316250 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308631.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316250

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449932	SAMEA112905251	Prebiotic
1.00	SAMEA10105033	SAMEA112904789	Prebiotic
1.00	SAMEA7697607	SAMEA112904861	Control
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA9449916	SAMEA112905127	Probiotic
1.00	SAMEA7571863	SAMEA112905012	Probiotic
1.00	SAMEA10145585	SAMEA112905186	Control
1.00	SAMEA10145589	SAMEA112904854	Control
1.00	SAMEA7025273	SAMEA112904965	Prebiotic
1.00	SAMEA7571835	SAMEA112905381	Prebiotic