HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308611

Details for MGYG000308611, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercoripullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoripullorum
Cluster representative

MGYG000310585

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310585 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308611’s cluster representative genome MGYG000310585 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310585 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308611 Copy API Endpoint
Samples containing this genome

MGYG000308611’s cluster representative (MGYG000310585) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310585’s sequence. Because MGYG000308611 has been clustered with MGYG000310585 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308611.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310585

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025277 Control
0.99 SAMEA7025270 Probiotic
0.97 SAMEA7722478 Control
0.93 SAMEA7697599 Control
0.93 SAMEA7025281 Probiotic
0.93 SAMEA10105010 Prebiotic
0.92 SAMEA10105011 Prebiotic
0.92 SAMEA7571795 Prebiotic
0.91 SAMEA7722476 Control
0.90 SAMEA7025269 Probiotic