MGYG000308583

Taxonomy

Bacteroides fragilis_A Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides fragilis_A

Cluster representative

MGYG000317725

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317725 on MGnify
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Annotations

MGYG000308583’s cluster representative genome MGYG000317725 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317725 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308583 Copy API Endpoint

MGYG000308583’s cluster representative (MGYG000317725) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317725’s sequence. Because MGYG000308583 has been clustered with MGYG000317725 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308583.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317725

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697596	SAMEA112905003	Prebiotic
1.00	SAMEA7697634	SAMEA112904913	Control
1.00	SAMEA7697583	SAMEA112904905	Probiotic
1.00	SAMEA7025276	SAMEA112904795	Control
1.00	SAMEA10159272	SAMEA112905386	Probiotic
1.00	SAMEA9449938	SAMEA112904995	Prebiotic
1.00	SAMEA7571838	SAMEA112905090	Control
1.00	SAMEA7571847	SAMEA112905358	Prebiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA7025272	SAMEA112905356	Prebiotic