MGYG000308532

Taxonomy

Gallibacteroides avistercoris Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > CHK158-818 > Gallibacteroides > Gallibacteroides avistercoris

Cluster representative

MGYG000310567

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310567 on MGnify
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Annotations

MGYG000308532’s cluster representative genome MGYG000310567 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310567 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308532 Copy API Endpoint

MGYG000308532’s cluster representative (MGYG000310567) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310567’s sequence. Because MGYG000308532 has been clustered with MGYG000310567 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308532.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310567

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025289	SAMEA112905253	Control
1.00	SAMEA7697626	SAMEA112905069	Probiotic
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA9449928	SAMEA112904898	Prebiotic
1.00	SAMEA7025283	SAMEA112904873	Control
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA7697608	SAMEA112905081	Control
1.00	SAMEA10105051	SAMEA112904756	Control
1.00	SAMEA10145595	SAMEA112904895	Control