HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308496

Details for MGYG000308496, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ligilactobacillus aviarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus aviarius
Cluster representative

MGYG000318110

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318110 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308496’s cluster representative genome MGYG000318110 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318110 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308496 Copy API Endpoint
Samples containing this genome

MGYG000308496’s cluster representative (MGYG000318110) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318110’s sequence. Because MGYG000308496 has been clustered with MGYG000318110 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308496.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318110

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Containment Sample accession Animal accession Treatment
0.31 SAMEA10105011 Prebiotic
0.31 SAMEA10130113 Control
0.30 SAMEA7697626 Probiotic
0.29 SAMEA10130112 Probiotic
0.29 SAMEA9449854 Prebiotic
0.29 SAMEA7025249 Prebiotic
0.29 SAMEA7571804 Prebiotic
0.29 SAMEA10104945 Probiotic
0.29 SAMEA10104952 Prebiotic
0.29 SAMEA9449920 Probiotic