HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308495

Details for MGYG000308495, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Barnesiella viscericola Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Barnesiellaceae > Barnesiella > Barnesiella viscericola
Cluster representative

MGYG000311447

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311447 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308495’s cluster representative genome MGYG000311447 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311447 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308495 Copy API Endpoint
Samples containing this genome

MGYG000308495’s cluster representative (MGYG000311447) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311447’s sequence. Because MGYG000308495 has been clustered with MGYG000311447 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308495.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311447

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Containment Sample accession Animal accession Treatment
0.24 SAMEA7697636 Prebiotic
0.24 SAMEA10145597 Control
0.23 SAMEA10105071 Prebiotic
0.23 SAMEA7571862 Probiotic
0.22 SAMEA9449940 Prebiotic
0.21 SAMEA7697598 Control
0.21 SAMEA10454448 Prebiotic
0.21 SAMEA7571782 Prebiotic
0.20 SAMEA10104996 Prebiotic
0.20 SAMEA7571824 Probiotic