HoloFood Data Portal

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MGYG000308488

Details for MGYG000308488, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter avicola
Cluster representative

MGYG000319122

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319122 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308488’s cluster representative genome MGYG000319122 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319122 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308488 Copy API Endpoint
Samples containing this genome

MGYG000308488’s cluster representative (MGYG000319122) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319122’s sequence. Because MGYG000308488 has been clustered with MGYG000319122 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308488.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319122

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Containment Sample accession Animal accession Treatment
0.21 SAMEA9449847 Probiotic
0.21 SAMEA9449897 Control
0.21 SAMEA7697590 Control
0.21 SAMEA10455494 Control
0.21 SAMEA10145579 Control
0.21 SAMEA10104976 Control
0.21 SAMEA10130076 Prebiotic
0.21 SAMEA10159198 Prebiotic
0.21 SAMEA7571813 Prebiotic
0.21 SAMEA9449935 Control