HoloFood Data Portal

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MGYG000308467

Details for MGYG000308467, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-508 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508
Cluster representative

MGYG000308736

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308736 on MGnify
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Annotations

MGYG000308467’s cluster representative genome MGYG000308736 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308736 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308467 Copy API Endpoint
Samples containing this genome

MGYG000308467’s cluster representative (MGYG000308736) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308736’s sequence. Because MGYG000308467 has been clustered with MGYG000308736 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308467.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308736

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Containment Sample accession Animal accession Treatment
0.27 SAMEA9449858 Probiotic
0.27 SAMEA7025269 Probiotic
0.27 SAMEA7571778 Control
0.27 SAMEA9449915 Probiotic
0.26 SAMEA9449943 Control
0.26 SAMEA10145572 Control
0.25 SAMEA7697603 Probiotic
0.25 SAMEA10104923 Control
0.25 SAMEA7571785 Probiotic
0.25 SAMEA10104908 Control