HoloFood Data Portal

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MGYG000308442

Details for MGYG000308442, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gastranaerophilaceae Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae
Cluster representative

MGYG000312345

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312345 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308442’s cluster representative genome MGYG000312345 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312345 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308442 Copy API Endpoint
Samples containing this genome

MGYG000308442’s cluster representative (MGYG000312345) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312345’s sequence. Because MGYG000308442 has been clustered with MGYG000312345 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308442.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312345

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025270 Probiotic
1.00 SAMEA10145601 Control
0.86 SAMEA7571832 Control
0.84 SAMEA7571843 Prebiotic
0.51 SAMEA7697608 Control
0.50 SAMEA10145587 Control
0.47 SAMEA10145589 Control
0.31 SAMEA10130088 Prebiotic
0.25 SAMEA7025274 Probiotic