HoloFood Data Portal

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MGYG000308438

Details for MGYG000308438, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdicola sp001915925 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Merdicola > Merdicola sp001915925
Cluster representative

MGYG000314365

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314365 on MGnify
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Annotations

MGYG000308438’s cluster representative genome MGYG000314365 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314365 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308438 Copy API Endpoint
Samples containing this genome

MGYG000308438’s cluster representative (MGYG000314365) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314365’s sequence. Because MGYG000308438 has been clustered with MGYG000314365 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308438.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314365

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Containment Sample accession Animal accession Treatment
0.80 SAMEA7025274 Probiotic
0.80 SAMEA10105037 Probiotic
0.78 SAMEA10455495 Control
0.78 SAMEA7025241 Probiotic
0.78 SAMEA7571844 Control
0.78 SAMEA7025238 Probiotic
0.77 SAMEA10104938 Prebiotic
0.77 SAMEA7571795 Prebiotic
0.77 SAMEA9449830 Control
0.77 SAMEA7571810 Prebiotic