HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308431

Details for MGYG000308431, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ruthenibacterium merdavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Ruthenibacterium > Ruthenibacterium merdavium
Cluster representative

MGYG000310100

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310100 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308431’s cluster representative genome MGYG000310100 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310100 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308431 Copy API Endpoint
Samples containing this genome

MGYG000308431’s cluster representative (MGYG000310100) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310100’s sequence. Because MGYG000308431 has been clustered with MGYG000310100 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308431.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310100

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Containment Sample accession Animal accession Treatment
0.93 SAMEA10105041 Probiotic
0.92 SAMEA7722473 Prebiotic
0.92 SAMEA7722479 Prebiotic
0.92 SAMEA7571801 Probiotic
0.91 SAMEA10105008 Control
0.91 SAMEA7571870 Prebiotic
0.91 SAMEA7571867 Control
0.90 SAMEA7571829 Prebiotic
0.90 SAMEA10104959 Prebiotic
0.90 SAMEA7571812 Control