HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308421

Details for MGYG000308421, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimorpha sp904420225 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fimimorpha > Fimimorpha sp904420225
Cluster representative

MGYG000311001

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311001 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308421’s cluster representative genome MGYG000311001 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311001 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308421 Copy API Endpoint
Samples containing this genome

MGYG000308421’s cluster representative (MGYG000311001) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311001’s sequence. Because MGYG000308421 has been clustered with MGYG000311001 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308421.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311001

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Containment Sample accession Animal accession Treatment
0.67 SAMEA10104979 Probiotic
0.65 SAMEA10104935 Prebiotic
0.63 SAMEA7697617 Prebiotic
0.61 SAMEA7571791 Control
0.61 SAMEA9449860 Control
0.60 SAMEA9449917 Probiotic
0.59 SAMEA7571809 Control
0.59 SAMEA7025246 Probiotic
0.59 SAMEA10159244 Probiotic
0.59 SAMEA7025276 Control