HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308416

Details for MGYG000308416, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000320454

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320454 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308416’s cluster representative genome MGYG000320454 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320454 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308416 Copy API Endpoint
Samples containing this genome

MGYG000308416’s cluster representative (MGYG000320454) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320454’s sequence. Because MGYG000308416 has been clustered with MGYG000320454 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308416.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320454

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Containment Sample accession Animal accession Treatment
0.88 SAMEA10104974 Probiotic
0.88 SAMEA9449937 Probiotic
0.87 SAMEA7697592 Control
0.87 SAMEA10105047 Control
0.86 SAMEA10105025 Prebiotic
0.86 SAMEA9449866 Probiotic
0.86 SAMEA9449898 Prebiotic
0.85 SAMEA9449928 Prebiotic
0.85 SAMEA10105011 Prebiotic
0.79 SAMEA10104951 Prebiotic