HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308414

Details for MGYG000308414, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprosoma intestinipullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Coprosoma > Coprosoma intestinipullorum
Cluster representative

MGYG000313511

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313511 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308414’s cluster representative genome MGYG000313511 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313511 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308414 Copy API Endpoint
Samples containing this genome

MGYG000308414’s cluster representative (MGYG000313511) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313511’s sequence. Because MGYG000308414 has been clustered with MGYG000313511 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308414.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313511

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571804 Prebiotic
0.94 SAMEA7571820 Probiotic
0.94 SAMEA7571768 Control
0.94 SAMEA10104997 Prebiotic
0.94 SAMEA7025273 Prebiotic
0.93 SAMEA7722478 Control
0.91 SAMEA7025287 Prebiotic
0.91 SAMEA10455496 Control
0.91 SAMEA7571772 Prebiotic
0.91 SAMEA10145595 Control