MGYG000308411

Taxonomy

CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273

Cluster representative

MGYG000320426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320426 on MGnify
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Annotations

MGYG000308411’s cluster representative genome MGYG000320426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320426 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308411 Copy API Endpoint

MGYG000308411’s cluster representative (MGYG000320426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320426’s sequence. Because MGYG000308411 has been clustered with MGYG000320426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308411.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320426

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104925	SAMEA112905338	Control
1.00	SAMEA7025235	SAMEA112905289	Probiotic
1.00	SAMEA7722476	SAMEA112904871	Control
1.00	SAMEA7722479	SAMEA112905115	Prebiotic
1.00	SAMEA10145562	SAMEA112905169	Control
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA14095989	SAMEA112904946	Prebiotic
1.00	SAMEA10105013	SAMEA112905048	Control
0.99	SAMEA10104992	SAMEA112905146	Prebiotic
0.99	SAMEA10455484	SAMEA112904896	Prebiotic