MGYG000308403

Taxonomy

Stercoripulliclostridium_A merdigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > DTU072 > Stercoripulliclostridium_A > Stercoripulliclostridium_A merdigallinarum

Cluster representative

MGYG000310072

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310072 on MGnify
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Annotations

MGYG000308403’s cluster representative genome MGYG000310072 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310072 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308403 Copy API Endpoint

MGYG000308403’s cluster representative (MGYG000310072) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310072’s sequence. Because MGYG000308403 has been clustered with MGYG000310072 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308403.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310072

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10145595	SAMEA112904895	Control
1.00	SAMEA7025270	SAMEA112904830	Probiotic
1.00	SAMEA10145585	SAMEA112905186	Control
0.70	SAMEA9449916	SAMEA112905127	Probiotic
0.32	SAMEA10105011	SAMEA112904889	Prebiotic
0.29	SAMEA10145560	SAMEA112904810	Control