HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308397

Details for MGYG000308397, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter faecipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter faecipullorum
Cluster representative

MGYG000317131

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317131 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308397’s cluster representative genome MGYG000317131 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317131 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308397 Copy API Endpoint
Samples containing this genome

MGYG000308397’s cluster representative (MGYG000317131) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317131’s sequence. Because MGYG000308397 has been clustered with MGYG000317131 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308397.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317131

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571823 Probiotic
0.99 SAMEA14095992 Probiotic
0.99 SAMEA7697631 Prebiotic
0.99 SAMEA7025277 Control
0.99 SAMEA10105058 Control
0.99 SAMEA10105049 Control
0.99 SAMEA7025269 Probiotic
0.98 SAMEA10104970 Probiotic
0.98 SAMEA10105048 Control
0.98 SAMEA10104972 Probiotic