HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308395

Details for MGYG000308395, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimorpha faecalis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fimimorpha > Fimimorpha faecalis
Cluster representative

MGYG000310152

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310152 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308395’s cluster representative genome MGYG000310152 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310152 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308395 Copy API Endpoint
Samples containing this genome

MGYG000308395’s cluster representative (MGYG000310152) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310152’s sequence. Because MGYG000308395 has been clustered with MGYG000310152 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308395.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310152

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Containment Sample accession Animal accession Treatment
0.24 SAMEA7571800 Probiotic
0.24 SAMEA7697600 Prebiotic
0.23 SAMEA7697603 Probiotic
0.23 SAMEA10104918 Probiotic
0.22 SAMEA7571838 Control
0.22 SAMEA7025278 Prebiotic
0.22 SAMEA9449849 Probiotic
0.22 SAMEA7571823 Probiotic
0.21 SAMEA9449955 Probiotic
0.21 SAMEA10145592 Control