HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308392

Details for MGYG000308392, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Avoscillospira_A avistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Avoscillospira_A > Avoscillospira_A avistercoris
Cluster representative

MGYG000314916

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314916 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308392’s cluster representative genome MGYG000314916 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314916 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308392 Copy API Endpoint
Samples containing this genome

MGYG000308392’s cluster representative (MGYG000314916) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314916’s sequence. Because MGYG000308392 has been clustered with MGYG000314916 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308392.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314916

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571812 Control
0.99 SAMEA10104929 Prebiotic
0.99 SAMEA14099421 Control
0.99 SAMEA9449963 Probiotic
0.99 SAMEA10105008 Control
0.99 SAMEA7571793 Prebiotic
0.99 SAMEA7025241 Probiotic
0.99 SAMEA10105011 Prebiotic
0.99 SAMEA7722476 Control
0.98 SAMEA7697623 Probiotic