HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905648, a HoloFood histological chicken sample
Metadata for sample SAMEA112905648, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 2.3 | per 100um |
| Acidic goblet cell number | 15.81 | None |
| CD3VillusBase | 44.44 | per 1000um squared |
| CD3VillusBaseEP | 29.51 | per 1000um squared |
| CD3VillusBaseLP | 66 | per 1000um squared |
| CD3VillusTip | 28.49 | per 1000um squared |
| CD3VillusTipEP | 18.45 | per 1000um squared |
| CD3VillusTipLP | 70.85 | per 1000um squared |
| CD3crypt | 43.78 | per 1000um squared |
| CD3cryptEP | 61.49 | per 1000um squared |
| CD3cryptLP | 26.08 | per 1000um squared |
| Crypt depth | 245.11 | um |
| Epithelial area | 105.79 | per 1000um squared |
| Mixed goblet cell density | 20.7 | per 100um |
| Mixed goblet cell number | 142.3 | None |
| Total goblet cell density | 23 | per 100um |
| Total goblet cell number | 158.11 | None |
| Villus height | 687.4 | um |
| Villus height: crypt depth ratio | 2.8 | um/um |
| Villus width | 153.89 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CC23.17A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CE | None |
| Treatment name | Prebiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CC | None |
| Trial description | Trial 3 | None |
| Trial end | 2019-07-14 | None |
| Trial start | 2019-06-09 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905648
