HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905645: CC18.17A3a_Histology

Sample data for SAMEA112905645, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904748
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905645 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905645, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 4.33 per 100um
Acidic goblet cell number 25.03 None
CD3VillusBase 13.93 per 1000um squared
CD3VillusBaseEP 14.32 per 1000um squared
CD3VillusBaseLP 13.22 per 1000um squared
CD3VillusTip 20.9 per 1000um squared
CD3VillusTipEP 18.17 per 1000um squared
CD3VillusTipLP 24.56 per 1000um squared
CD3crypt 30.42 per 1000um squared
CD3cryptEP 48.04 per 1000um squared
CD3cryptLP 12.8 per 1000um squared
Crypt depth 161 um
Epithelial area 102.12 per 1000um squared
Mixed goblet cell density 9.33 per 100um
Mixed goblet cell number 53.9 None
Total goblet cell density 13.67 per 100um
Total goblet cell number 78.93 None
Villus height 577.5 um
Villus height: crypt depth ratio 3.59 um/um
Villus width 176.83 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC18.17A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905645