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SAMEA112905643: CC01.17A3a_Histology

Sample data for SAMEA112905643, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905082
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905643 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905643, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.11 per 100um
Acidic goblet cell number 7.83 None
CD3VillusBase 23.21 per 1000um squared
CD3VillusBaseEP 23.13 per 1000um squared
CD3VillusBaseLP 23.37 per 1000um squared
CD3VillusTip 15.13 per 1000um squared
CD3VillusTipEP 11.09 per 1000um squared
CD3VillusTipLP 29.98 per 1000um squared
CD3crypt 32.03 per 1000um squared
CD3cryptEP 48.4 per 1000um squared
CD3cryptLP 15.65 per 1000um squared
Crypt depth 195.48 um
Epithelial area 128.28 per 1000um squared
Mixed goblet cell density 19.22 per 100um
Mixed goblet cell number 135.42 None
Total goblet cell density 20.33 per 100um
Total goblet cell number 143.25 None
Villus height 704.5 um
Villus height: crypt depth ratio 3.6 um/um
Villus width 182.08 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC01.17A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905643