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SAMEA112905642: CC21.16A3a_Histology

Sample data for SAMEA112905642, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904818
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905642 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905642, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2.9 per 100um
Acidic goblet cell number 20.27 None
CD3VillusBase 18.03 per 1000um squared
CD3VillusBaseEP 15.34 per 1000um squared
CD3VillusBaseLP 23.36 per 1000um squared
CD3VillusTip 21.5 per 1000um squared
CD3VillusTipEP 21.18 per 1000um squared
CD3VillusTipLP 22.34 per 1000um squared
CD3crypt 27.05 per 1000um squared
CD3cryptEP 37.96 per 1000um squared
CD3cryptLP 16.15 per 1000um squared
Crypt depth 297.61 um
Epithelial area 106.4 per 1000um squared
Mixed goblet cell density 16.4 per 100um
Mixed goblet cell number 114.63 None
Total goblet cell density 19.3 per 100um
Total goblet cell number 134.9 None
Villus height 699 um
Villus height: crypt depth ratio 2.35 um/um
Villus width 152.22 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC21.16A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905642