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SAMEA112905641: CC15.16A3a_Histology

Sample data for SAMEA112905641, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905336
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905641 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905641, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.1 per 100um
Acidic goblet cell number 0.75 None
CD3VillusBase 20.85 per 1000um squared
CD3VillusBaseEP 15.92 per 1000um squared
CD3VillusBaseLP 29.89 per 1000um squared
CD3VillusTip 14.07 per 1000um squared
CD3VillusTipEP 8.88 per 1000um squared
CD3VillusTipLP 36.1 per 1000um squared
CD3crypt 33.54 per 1000um squared
CD3cryptEP 57.25 per 1000um squared
CD3cryptLP 9.83 per 1000um squared
Crypt depth 170.33 um
Epithelial area 102.55 per 1000um squared
Mixed goblet cell density 22.4 per 100um
Mixed goblet cell number 168.6 None
Total goblet cell density 22.5 per 100um
Total goblet cell number 169.35 None
Villus height 752.7 um
Villus height: crypt depth ratio 4.42 um/um
Villus width 136.25 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC15.16A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905641