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Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905638, a HoloFood histological chicken sample
Metadata for sample SAMEA112905638, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 2.9 | per 100um |
| Acidic goblet cell number | 14.38 | None |
| CD3VillusBase | 19.6 | per 1000um squared |
| CD3VillusBaseEP | 18.69 | per 1000um squared |
| CD3VillusBaseLP | 21.14 | per 1000um squared |
| CD3VillusTip | 24.28 | per 1000um squared |
| CD3VillusTipEP | 21.64 | per 1000um squared |
| CD3VillusTipLP | 29.31 | per 1000um squared |
| CD3crypt | 46.4 | per 1000um squared |
| CD3cryptEP | 63.1 | per 1000um squared |
| CD3cryptLP | 29.69 | per 1000um squared |
| Crypt depth | 192.4 | um |
| Epithelial area | 66.21 | per 1000um squared |
| Mixed goblet cell density | 21.6 | per 100um |
| Mixed goblet cell number | 107.12 | None |
| Total goblet cell density | 24.5 | per 100um |
| Total goblet cell number | 121.51 | None |
| Villus height | 495.9 | um |
| Villus height: crypt depth ratio | 2.58 | um/um |
| Villus width | 133.51 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CC09.16A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CO | None |
| Treatment name | Probiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CC | None |
| Trial description | Trial 3 | None |
| Trial end | 2019-07-14 | None |
| Trial start | 2019-06-09 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905638
