HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905636: CC05.15A3a_Histology

Sample data for SAMEA112905636, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905054
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905636 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905636, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 3 per 100um
Acidic goblet cell number 15.88 None
CD3VillusBase 19.67 per 1000um squared
CD3VillusBaseEP 19.87 per 1000um squared
CD3VillusBaseLP 19.25 per 1000um squared
CD3VillusTip 21.46 per 1000um squared
CD3VillusTipEP 18.01 per 1000um squared
CD3VillusTipLP 31.34 per 1000um squared
CD3crypt 39.31 per 1000um squared
CD3cryptEP 56.34 per 1000um squared
CD3cryptLP 22.28 per 1000um squared
Crypt depth 167.67 um
Epithelial area 81.16 per 1000um squared
Mixed goblet cell density 25 per 100um
Mixed goblet cell number 132.33 None
Total goblet cell density 28 per 100um
Total goblet cell number 148.21 None
Villus height 529.3 um
Villus height: crypt depth ratio 3.16 um/um
Villus width 153.33 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC05.15A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905636