HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905635, a HoloFood histological chicken sample
Metadata for sample SAMEA112905635, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 2.4 | per 100um |
| CD3VillusBase | 21.05 | per 1000um squared |
| CD3VillusBaseEP | 19.83 | per 1000um squared |
| CD3VillusBaseLP | 25.52 | per 1000um squared |
| CD3VillusTip | 20.65 | per 1000um squared |
| CD3VillusTipEP | 17.58 | per 1000um squared |
| CD3VillusTipLP | 28.94 | per 1000um squared |
| CD3crypt | 39.62 | per 1000um squared |
| CD3cryptEP | 54.96 | per 1000um squared |
| CD3cryptLP | 24.29 | per 1000um squared |
| Crypt depth | 188.56 | um |
| Epithelial area | 120.96 | per 1000um squared |
| Mixed goblet cell density | 23.4 | per 100um |
| Total goblet cell density | 25.8 | per 100um |
| Villus height | 730.1 | um |
| Villus height: crypt depth ratio | 3.87 | um/um |
| Villus width | 165.67 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CC04.16A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CO | None |
| Treatment name | Probiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CC | None |
| Trial description | Trial 3 | None |
| Trial end | 2019-07-14 | None |
| Trial start | 2019-06-09 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905635
