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SAMEA112905626: CC07.14A3a_Histology

Sample data for SAMEA112905626, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905262
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905626 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905626, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.67 per 100um
Acidic goblet cell number 6.26 None
CD3VillusBase 38.13 per 1000um squared
CD3VillusBaseEP 30.16 per 1000um squared
CD3VillusBaseLP 56.99 per 1000um squared
CD3VillusTip 31.08 per 1000um squared
CD3VillusTipEP 24.66 per 1000um squared
CD3VillusTipLP 50.22 per 1000um squared
CD3crypt 38.22 per 1000um squared
CD3cryptEP 52.57 per 1000um squared
CD3cryptLP 23.87 per 1000um squared
Crypt depth 243.08 um
Epithelial area 275.58 per 1000um squared
Mixed goblet cell density 20 per 100um
Mixed goblet cell number 187.9 None
Total goblet cell density 20.67 per 100um
Total goblet cell number 194.16 None
Villus height 939.5 um
Villus height: crypt depth ratio 3.87 um/um
Villus width 293.33 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC07.14A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905626