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SAMEA112905621: CC18.12A3a_Histology

Sample data for SAMEA112905621, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905012
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905621 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905621, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 6 per 100um
Acidic goblet cell number 40.64 None
CD3VillusBase 39.16 per 1000um squared
CD3VillusBaseEP 35.33 per 1000um squared
CD3VillusBaseLP 45.99 per 1000um squared
CD3VillusTip 26.54 per 1000um squared
CD3VillusTipEP 20.75 per 1000um squared
CD3VillusTipLP 44.28 per 1000um squared
CD3crypt 12.12 per 1000um squared
CD3cryptEP 12.91 per 1000um squared
CD3cryptLP 11.32 per 1000um squared
Crypt depth 194.83 um
Epithelial area 86.68 per 1000um squared
Mixed goblet cell density 21.7 per 100um
Mixed goblet cell number 146.98 None
Total goblet cell density 27.7 per 100um
Total goblet cell number 187.62 None
Villus height 677.3 um
Villus height: crypt depth ratio 3.48 um/um
Villus width 127.98 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC18.12A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905621