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SAMEA112905618: CC13.10A3a_Histology

Sample data for SAMEA112905618, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905040
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905618 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905618, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 6.1 per 100um
Acidic goblet cell number 49.74 None
CD3VillusBase 43.91 per 1000um squared
CD3VillusBaseEP 41.71 per 1000um squared
CD3VillusBaseLP 46.07 per 1000um squared
CD3VillusTip 29.46 per 1000um squared
CD3VillusTipEP 22.55 per 1000um squared
CD3VillusTipLP 44.12 per 1000um squared
CD3crypt 20.06 per 1000um squared
CD3cryptEP 25.81 per 1000um squared
CD3cryptLP 14.31 per 1000um squared
Crypt depth 151.56 um
Epithelial area 123.39 per 1000um squared
Mixed goblet cell density 17.8 per 100um
Mixed goblet cell number 145.13 None
Total goblet cell density 23.9 per 100um
Total goblet cell number 194.86 None
Villus height 815.3 um
Villus height: crypt depth ratio 5.38 um/um
Villus width 151.33 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC13.10A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905618