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SAMEA112905612: CC06.12A3a_Histology

Sample data for SAMEA112905612, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904741
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905612 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905612, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.8 per 100um
Acidic goblet cell number 8.61 None
CD3VillusBase 41.91 per 1000um squared
CD3VillusBaseEP 37.05 per 1000um squared
CD3VillusBaseLP 49.79 per 1000um squared
CD3VillusTip 27.42 per 1000um squared
CD3VillusTipEP 19.12 per 1000um squared
CD3VillusTipLP 52.23 per 1000um squared
CD3crypt 14.94 per 1000um squared
CD3cryptEP 17.42 per 1000um squared
CD3cryptLP 12.47 per 1000um squared
Crypt depth 97.84 um
Epithelial area 66.26 per 1000um squared
Mixed goblet cell density 29.8 per 100um
Mixed goblet cell number 142.57 None
Total goblet cell density 31.6 per 100um
Total goblet cell number 151.18 None
Villus height 478.4 um
Villus height: crypt depth ratio 4.89 um/um
Villus width 138.49 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC06.12A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905612