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SAMEA112905610: CC24.07A3a_Histology

Sample data for SAMEA112905610, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905068
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905610 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905610, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2.8 per 100um
Acidic goblet cell number 19.28 None
CD3VillusBase 53.22 per 1000um squared
CD3VillusBaseEP 34.87 per 1000um squared
CD3VillusBaseLP 74.91 per 1000um squared
CD3VillusTip 29.15 per 1000um squared
CD3VillusTipEP 15.31 per 1000um squared
CD3VillusTipLP 56.06 per 1000um squared
CD3crypt 23.69 per 1000um squared
CD3cryptEP 33.41 per 1000um squared
CD3cryptLP 13.96 per 1000um squared
Crypt depth 166.86 um
Epithelial area 86.29 per 1000um squared
Mixed goblet cell density 26.4 per 100um
Mixed goblet cell number 181.81 None
Total goblet cell density 29.2 per 100um
Total goblet cell number 201.1 None
Villus height 688.7 um
Villus height: crypt depth ratio 4.13 um/um
Villus width 125.3 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC24.07A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905610