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Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905602, a HoloFood histological chicken sample
Metadata for sample SAMEA112905602, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 2.7 | per 100um |
| Acidic goblet cell number | 14.96 | None |
| CD3VillusBase | 39.09 | per 1000um squared |
| CD3VillusBaseEP | 32 | per 1000um squared |
| CD3VillusBaseLP | 49.15 | per 1000um squared |
| CD3VillusTip | 30.41 | per 1000um squared |
| CD3VillusTipEP | 23.34 | per 1000um squared |
| CD3VillusTipLP | 49.76 | per 1000um squared |
| CD3crypt | 10.53 | per 1000um squared |
| CD3cryptEP | 12.78 | per 1000um squared |
| CD3cryptLP | 8.29 | per 1000um squared |
| Crypt depth | 161.6 | um |
| Epithelial area | 80.46 | per 1000um squared |
| Mixed goblet cell density | 24.1 | per 100um |
| Mixed goblet cell number | 133.54 | None |
| Total goblet cell density | 26.8 | per 100um |
| Total goblet cell number | 148.5 | None |
| Villus height | 554.1 | um |
| Villus height: crypt depth ratio | 3.43 | um/um |
| Villus width | 145.2 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CC03.07A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CC | None |
| Treatment name | Control | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CC | None |
| Trial description | Trial 3 | None |
| Trial end | 2019-07-14 | None |
| Trial start | 2019-06-09 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905602
