HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905596, a HoloFood histological chicken sample
Metadata for sample SAMEA112905596, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 8.1 | per 100um |
| Acidic goblet cell number | 47.64 | None |
| CD3VillusBase | 30.24 | per 1000um squared |
| CD3VillusBaseEP | 23.72 | per 1000um squared |
| CD3VillusBaseLP | 49.46 | per 1000um squared |
| CD3VillusTip | 13.8 | per 1000um squared |
| CD3VillusTipEP | 9.8 | per 1000um squared |
| CD3VillusTipLP | 31.47 | per 1000um squared |
| CD3crypt | 23.26 | per 1000um squared |
| CD3cryptEP | 30.41 | per 1000um squared |
| CD3cryptLP | 16.11 | per 1000um squared |
| Crypt depth | 143.49 | um |
| Epithelial area | 130.21 | per 1000um squared |
| Mixed goblet cell density | 16.6 | per 100um |
| Mixed goblet cell number | 97.62 | None |
| Total goblet cell density | 24.7 | per 100um |
| Total goblet cell number | 145.26 | None |
| Villus height | 696.3 | um |
| Villus height: crypt depth ratio | 4.85 | um/um |
| Villus width | 187.01 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CC18.06A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CO | None |
| Treatment name | Probiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CC | None |
| Trial description | Trial 3 | None |
| Trial end | 2019-07-14 | None |
| Trial start | 2019-06-09 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905596
