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SAMEA112905592: CC13.04A3a_Histology

Sample data for SAMEA112905592, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905337
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905592 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905592, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 8.7 per 100um
Acidic goblet cell number 48.78 None
CD3VillusBase 29.76 per 1000um squared
CD3VillusBaseEP 25.48 per 1000um squared
CD3VillusBaseLP 44.94 per 1000um squared
CD3VillusTip 16.14 per 1000um squared
CD3VillusTipEP 13.78 per 1000um squared
CD3VillusTipLP 32.25 per 1000um squared
CD3crypt 20.18 per 1000um squared
CD3cryptEP 28.47 per 1000um squared
CD3cryptLP 11.89 per 1000um squared
Crypt depth 141.12 um
Epithelial area 72.12 per 1000um squared
Mixed goblet cell density 16.6 per 100um
Mixed goblet cell number 93.08 None
Total goblet cell density 25.3 per 100um
Total goblet cell number 141.86 None
Villus height 581.1 um
Villus height: crypt depth ratio 4.12 um/um
Villus width 124.11 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC13.04A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905592