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SAMEA112905590: CC10.06A3a_Histology

Sample data for SAMEA112905590, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905130
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905590 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905590, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 12.8 per 100um
Acidic goblet cell number 92.8 None
CD3VillusBase 20.79 per 1000um squared
CD3VillusBaseEP 18.29 per 1000um squared
CD3VillusBaseLP 28.45 per 1000um squared
CD3VillusTip 17.59 per 1000um squared
CD3VillusTipEP 11.82 per 1000um squared
CD3VillusTipLP 43.41 per 1000um squared
CD3crypt 18.29 per 1000um squared
CD3cryptEP 21.59 per 1000um squared
CD3cryptLP 14.99 per 1000um squared
Crypt depth 194.63 um
Epithelial area 86.04 per 1000um squared
Mixed goblet cell density 8 per 100um
Mixed goblet cell number 58 None
Total goblet cell density 20.8 per 100um
Total goblet cell number 150.8 None
Villus height 715.7 um
Villus height: crypt depth ratio 3.68 um/um
Villus width 120.22 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC10.06A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905590