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SAMEA112905584: CC04.06A3a_Histology

Sample data for SAMEA112905584, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905123
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905584 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905584, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 14.18 per 100um
Acidic goblet cell number 102.23 None
CD3VillusBase 23.31 per 1000um squared
CD3VillusBaseEP 24 per 1000um squared
CD3VillusBaseLP 21.53 per 1000um squared
CD3VillusTip 15.2 per 1000um squared
CD3VillusTipEP 13.41 per 1000um squared
CD3VillusTipLP 27.46 per 1000um squared
CD3crypt 9.82 per 1000um squared
CD3cryptEP 10.97 per 1000um squared
CD3cryptLP 8.68 per 1000um squared
Crypt depth 147.7 um
Epithelial area 29.83 per 1000um squared
Mixed goblet cell density 3.63 per 100um
Mixed goblet cell number 26.16 None
Total goblet cell density 17.81 per 100um
Total goblet cell number 128.39 None
Villus height 404.5 um
Villus height: crypt depth ratio 2.74 um/um
Villus width 73.76 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC04.06A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905584