HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905579: CC17.03A3a_Histology

Sample data for SAMEA112905579, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905080
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905579 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905579, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2.1 per 100um
Acidic goblet cell number 13.34 None
CD3VillusBase 40.31 per 1000um squared
CD3VillusBaseEP 32.39 per 1000um squared
CD3VillusBaseLP 54.78 per 1000um squared
CD3VillusTip 22.74 per 1000um squared
CD3VillusTipEP 16.8 per 1000um squared
CD3VillusTipLP 46.59 per 1000um squared
CD3crypt 13.19 per 1000um squared
CD3cryptEP 12.13 per 1000um squared
CD3cryptLP 14.25 per 1000um squared
Crypt depth 159.08 um
Epithelial area 76.14 per 1000um squared
Mixed goblet cell density 17.9 per 100um
Mixed goblet cell number 113.72 None
Total goblet cell density 20 per 100um
Total goblet cell number 127.06 None
Villus height 569.2 um
Villus height: crypt depth ratio 3.58 um/um
Villus width 133.78 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC17.03A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905579