HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905566: CB05.15A3a_Histology

Sample data for SAMEA112905566, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904766
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905566 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905566, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.7 per 100um
Acidic goblet cell number 9.27 None
CD3VillusBase 28.51 per 1000um squared
CD3VillusBaseEP 22.96 per 1000um squared
CD3VillusBaseLP 36.61 per 1000um squared
CD3VillusTip 23.19 per 1000um squared
CD3VillusTipEP 19.2 per 1000um squared
CD3VillusTipLP 34.28 per 1000um squared
CD3crypt 39.05 per 1000um squared
CD3cryptEP 61.47 per 1000um squared
CD3cryptLP 16.63 per 1000um squared
Crypt depth 136.5 um
Epithelial area 77.68 per 1000um squared
Mixed goblet cell density 24.4 per 100um
Mixed goblet cell number 133.1 None
Total goblet cell density 26.1 per 100um
Total goblet cell number 142.38 None
Villus height 545.5 um
Villus height: crypt depth ratio 4 um/um
Villus width 142.4 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB05.15A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905566