HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905562: CB20.13A3a_Histology

Sample data for SAMEA112905562, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904746
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905562 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905562, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.2 per 100um
Acidic goblet cell number 6.68 None
CD3VillusBase 21.67 per 1000um squared
CD3VillusBaseEP 25.26 per 1000um squared
CD3VillusBaseLP 16.64 per 1000um squared
CD3VillusTip 27.21 per 1000um squared
CD3VillusTipEP 26.34 per 1000um squared
CD3VillusTipLP 29.12 per 1000um squared
CD3crypt 32.63 per 1000um squared
CD3cryptEP 45.02 per 1000um squared
CD3cryptLP 20.24 per 1000um squared
Crypt depth 142.9 um
Epithelial area 81.82 per 1000um squared
Mixed goblet cell density 25.6 per 100um
Mixed goblet cell number 142.49 None
Total goblet cell density 26.8 per 100um
Total goblet cell number 149.17 None
Villus height 556.6 um
Villus height: crypt depth ratio 3.9 um/um
Villus width 147 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB20.13A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905562