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SAMEA112905548: CB16.12A3a_Histology

Sample data for SAMEA112905548, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905207
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905548 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905548, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2 per 100um
Acidic goblet cell number 11.84 None
CD3VillusBase 48.96 per 1000um squared
CD3VillusBaseEP 55.15 per 1000um squared
CD3VillusBaseLP 42.03 per 1000um squared
CD3VillusTip 48.47 per 1000um squared
CD3VillusTipEP 41.79 per 1000um squared
CD3VillusTipLP 62.32 per 1000um squared
CD3crypt 13.09 per 1000um squared
CD3cryptEP 13.64 per 1000um squared
CD3cryptLP 12.54 per 1000um squared
Crypt depth 184.3 um
Epithelial area 70.35 per 1000um squared
Mixed goblet cell density 16.38 per 100um
Mixed goblet cell number 96.97 None
Total goblet cell density 18.38 per 100um
Total goblet cell number 108.82 None
Villus height 592.2 um
Villus height: crypt depth ratio 3.21 um/um
Villus width 118.8 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB16.12A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905548